Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
BLCA rs10036208 chr5:131571323 T/C 4.91E-6 394 19.27 19.45 14.17 KM Plot
BLCA rs1007602 chr5:131602166 T/C 1.12E-6 400 18.62 19.13 14.37 KM Plot
BLCA rs10242452 chr7:2134616 C/T 1.13E-12 405 2.17 17.4 17.87 KM Plot
BLCA rs10463891 chr5:131597392 C/T 2.61E-6 405 15.23 19.1 19.27 KM Plot
BLCA rs10490926 chr10:83236292 C/T 8.7E-9 405 17.87 16.93 2.27 KM Plot
BLCA rs11010769 chr10:36959273 A/C 6.99E-15 405 2.07 19.07 17.4 KM Plot
BLCA rs11060208 chr12:123309422 G/A 5.04E-8 404 17.87 16.13 2.7 KM Plot
BLCA rs11060209 chr12:123309544 A/G 5.04E-8 404 17.87 16.13 2.7 KM Plot
BLCA rs112300250 chr5:131583292 G/A 1.29E-6 404 21.37 18.07 14.18 KM Plot
BLCA rs112587760 chr4:119330492 A/G 1.23E-12 399 17.4 20.15 1.38 KM Plot
BLCA rs113309120 chr5:131600281 C/CCCCATCTCCAG 5.44E-6 402 17.97 19.77 14.22 KM Plot
BLCA rs113336496 chr4:119336957 C/T 1.04E-9 399 17.4 20.33 2.13 KM Plot
BLCA rs11400810 chr3:141313206 A/AT 7.39E-7 395 17.47 17.07 3.93 KM Plot
BLCA rs114321375 chr4:119341663 G/A 1.16E-12 399 17.4 20.15 1.38 KM Plot
BLCA rs115931311 chr3:131603241 G/C 1.18E-7 399 17.03 21.45 2.93 KM Plot