Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
BLCA | rs10036208 | chr5:131571323 | T/C | 4.91E-6 | 394 | 19.27 | 19.45 | 14.17 | KM Plot |
BLCA | rs1007602 | chr5:131602166 | T/C | 1.12E-6 | 400 | 18.62 | 19.13 | 14.37 | KM Plot |
BLCA | rs10242452 | chr7:2134616 | C/T | 1.13E-12 | 405 | 2.17 | 17.4 | 17.87 | KM Plot |
BLCA | rs10463891 | chr5:131597392 | C/T | 2.61E-6 | 405 | 15.23 | 19.1 | 19.27 | KM Plot |
BLCA | rs10490926 | chr10:83236292 | C/T | 8.7E-9 | 405 | 17.87 | 16.93 | 2.27 | KM Plot |
BLCA | rs11010769 | chr10:36959273 | A/C | 6.99E-15 | 405 | 2.07 | 19.07 | 17.4 | KM Plot |
BLCA | rs11060208 | chr12:123309422 | G/A | 5.04E-8 | 404 | 17.87 | 16.13 | 2.7 | KM Plot |
BLCA | rs11060209 | chr12:123309544 | A/G | 5.04E-8 | 404 | 17.87 | 16.13 | 2.7 | KM Plot |
BLCA | rs112300250 | chr5:131583292 | G/A | 1.29E-6 | 404 | 21.37 | 18.07 | 14.18 | KM Plot |
BLCA | rs112587760 | chr4:119330492 | A/G | 1.23E-12 | 399 | 17.4 | 20.15 | 1.38 | KM Plot |
BLCA | rs113309120 | chr5:131600281 | C/CCCCATCTCCAG | 5.44E-6 | 402 | 17.97 | 19.77 | 14.22 | KM Plot |
BLCA | rs113336496 | chr4:119336957 | C/T | 1.04E-9 | 399 | 17.4 | 20.33 | 2.13 | KM Plot |
BLCA | rs11400810 | chr3:141313206 | A/AT | 7.39E-7 | 395 | 17.47 | 17.07 | 3.93 | KM Plot |
BLCA | rs114321375 | chr4:119341663 | G/A | 1.16E-12 | 399 | 17.4 | 20.15 | 1.38 | KM Plot |
BLCA | rs115931311 | chr3:131603241 | G/C | 1.18E-7 | 399 | 17.03 | 21.45 | 2.93 | KM Plot |